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Update adapters and converters #440

Merged
merged 191 commits into from
Mar 31, 2025
Merged

Update adapters and converters #440

merged 191 commits into from
Mar 31, 2025

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FynnBe
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@FynnBe FynnBe commented Dec 5, 2024

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thodkatz and others added 18 commits August 15, 2024 15:17
@thodkatz
Fix weight converters and return their corresponding v5 weight descr
fbbfc57
@thodkatz
Create an interface for weight conversion
a37b568 
- Instead of having one module per conversion, use one module, and individual classes will handle the logic of the conversion
- Create an abstract class to have a common interface among conversions
@FynnBe
fix import_callable annotation
db891eb
@FynnBe
improve error traceback for single weights format attempt
a391d94
@FynnBe
add load_state
4103b51
@FynnBe
update ONNXModelAdapter
7ec7afb
@FynnBe
update TorchscriptModelAdapter typing
ed8f1db
@FynnBe
update unzipping in tensorflow model adapter
9ae626d
@FynnBe
add upper bounds to dependencies
fceed3c
@FynnBe
update dev envs
77e1e84
@FynnBe
WIP setup run expensive tests
a131369
@FynnBe
WIP resource tests
0888c52
@FynnBe
expose sha256 arg
40dfe25
@FynnBe
update torchscript adapter
bb539d4
@FynnBe
bump spec lib version
fedd43c
@FynnBe
Merge remote-tracking branch 'thodkatz/weight-converters' into fix_to…
b7d5f98 
…rch_load

# Conflicts:
#	bioimageio/core/weight_converter/torch/_torchscript.py
#	setup.py
@FynnBe
WIP refactor backend libs
7f6fdf1
@FynnBe
add summary_path arg
7fea808
@github-actions github-actions bot added ci Continuous Integration github_actions Pull requests that update Github_actions code labels Dec 5, 2024
@github-actions github-actions bot added the documentation Improvements or additions to documentation label Dec 6, 2024
@FynnBe FynnBe force-pushed the fix_torch_load branch 2 times, most recently from 16ad170 to 1ef8373 Compare March 28, 2025 12:39
@FynnBe FynnBe force-pushed the fix_torch_load branch 4 times, most recently from 0515019 to dfd52d5 Compare March 28, 2025 14:15
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☂️ Python Coverage

current status: ✅

Overall Coverage

Lines Covered Coverage Threshold Status
3559 2726 77% 0% 🟢

New Files

File Coverage Status
bioimageio/core/backends/_init_.py 100% 🟢
bioimageio/core/backends/_model_adapter.py 76% 🟢
bioimageio/core/backends/onnx_backend.py 89% 🟢
bioimageio/core/backends/pytorch_backend.py 84% 🟢
bioimageio/core/backends/tensorflow_backend.py 58% 🟢
bioimageio/core/backends/torchscript_backend.py 92% 🟢
bioimageio/core/model_adapters.py 80% 🟢
bioimageio/core/utils/_compare.py 89% 🟢
bioimageio/core/weight_converters/init.py 100% 🟢
bioimageio/core/weight_converters/_add_weights.py 34% 🟢
bioimageio/core/weight_converters/_utils_onnx.py 100% 🟢
bioimageio/core/weight_converters/keras_to_tensorflow.py 0% 🟢
bioimageio/core/weight_converters/pytorch_to_onnx.py 96% 🟢
bioimageio/core/weight_converters/pytorch_to_torchscript.py 95% 🟢
bioimageio/core/weight_converters/torchscript_to_onnx.py 0% 🟢
TOTAL 73% 🟢

Modified Files

File Coverage Status
bioimageio/core/_init_.py 100% 🟢
bioimageio/core/_main_.py 83% 🟢
bioimageio/core/_prediction_pipeline.py 89% 🟢
bioimageio/core/_resource_tests.py 61% 🟢
bioimageio/core/axis.py 75% 🟢
bioimageio/core/block_meta.py 84% 🟢
bioimageio/core/cli.py 83% 🟢
bioimageio/core/commands.py 77% 🟢
bioimageio/core/common.py 100% 🟢
bioimageio/core/digest_spec.py 86% 🟢
bioimageio/core/io.py 76% 🟢
bioimageio/core/prediction.py 61% 🟢
bioimageio/core/proc_ops.py 81% 🟢
bioimageio/core/proc_setup.py 92% 🟢
bioimageio/core/sample.py 93% 🟢
bioimageio/core/stat_calculators.py 68% 🟢
bioimageio/core/tensor.py 85% 🟢
bioimageio/core/utils/_init_.py 75% 🟢
TOTAL 82% 🟢

updated for commit: 7e9888a by action🐍

@FynnBe FynnBe merged commit 5b8bd97 into main Mar 31, 2025
12 checks passed
@FynnBe FynnBe deleted the fix_torch_load branch March 31, 2025 07:48
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3 participants
@FynnBe @thodkatz @Tomaz-Vieira